Select Publications
download (1).jpg
Gene expression based inference of cancer drug sensitivity

Smriti Chawla, Anja Rockstroh, Melanie Lehman, Ellca Ratther, Atishay Jain, Anuneet Anand, Apoorva Gupta, Namrata Bhattacharya, Sarita Poonia, Priyadarshini Rai, Nirjhar Das, Angshul Majumdar, Jayadeva Jayadeva, Gaurav Ahuja, Brett Hollier, Colleen Nelson*, Debarka Sengupta*

Nature Comms. (In Press)

download (4).jpg
A new deep learning technique reveals the exclusive functional contributions of individual cancer mutations

Prashant Gupta, Aashi Jindal, Gaurav Ahuja, Jayadeva*, Debarka Sengupta*

Screenshot 2022-08-12 204103.png
Artificial intelligence uncovers carcinogenic human metabolites

Aayushi Mittal, Sanjay Kumar Mohanty, Vishakha Gautam, Sakshi Arora, Sheetanshu Saproo, Ria Gupta, Roshan Sivakumar, Prakriti Garg, Anmol Aggarwal, Padmasini Raghavachary, Nilesh Kumar Dixit, Vijay Pal Singh, Anurag Mehta, Juhi Tayal, Srivatsava Naidu, Debarka Sengupta* & Gaurav Ahuja*

1-s2.0-S0022283621X00162-cov200h.gif
Quantification of Age-Related Decline in Transcriptional Homeostasis

Krishan Gupta, Princey Yadav, Sidrah Maryam, Gaurav Ahuja*, Debarka Sengupta*

4.cover.gif
Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-seq data

Krishan Gupta, Manan Lalit, Aditya Biswas, Chad D. Sanada, Cassandra Greene, Kyle Hukari, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Naveen Ramalingam, Gaurav Ahuja, Abhik Ghosh, Debarka Sengupta*

Genome Res. 2021 Apr; 31(4): 689–697.

1-s2.0-S0021925821X0004X-cov150h.gif
OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding

Ria Gupta, Aayushi Mittal, Vishesh Agrawal, Sushant Gupta, Krishan Gupta, Rishi Raj Jain, Prakriti Garg, Sanjay Kumar Mohanty, Riya Sogani, Harshit Singh Chhabra, Vishakha Gautam, Tripti Mishra, Debarka Sengupta, Gaurav Ahuja*

m_cover.jpeg
The Cellular basis of loss of smell in 2019-nCoV-infected individuals

Krishan Gupta, Sanjay Kumar Mohanty, Aayushi Mittal, Siddhant Kalra, Suvendu Kumar, Tripti Mishra, Jatin Ahuja, Debarka Sengupta*, Gaurav Ahuja*

m_cover (2).gif
UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles

Smriti Chawla, Sudhagar Samydurai, Say Li Kong, Zhengwei Wu, Zhenxun Wang, Wai Leong Tam, Debarka Sengupta*, Vibhor Kumar*

download (2).jpg
Machine-OlF-Action: A unified framework for developing and interpreting machine-learning models for chemosensory research

Anku Gupta, Mohit Choudhary, Sanjay Kumar Mohanty, Aayushi Mittal, Krishan Gupta, Aditya Arya, Suvendu Kumar, Nikhil Katyayan, Nilesh Kumar Dixit, Siddhant Kalra, Manshi Goel, Megha Sahni, Vrinda Singhal, Tripti Mishra, Debarka Sengupta*, Gaurav Ahuja*

12864.jpg
Molecular signature comprising 11 platelet-genes enables accurate blood-based diagnosis of NSCLC

Chitrita Goswami, Smriti Chawla, Deepshi Thakral, Himanshu Pant, Pramod Verma, Prabhat Singh Malik, Jayadeva, Ritu Gupta*, Gaurav Ahuja*, Debarka Sengupta*

jcm-logo-print.webp
Integrative Analysis and Machine Learning based Characterization of Single Circulating Tumor Cells

Arvind Iyer, Krishan Gupta, Shreya Sharma, Kishore Hari, Yi Fang Lee, Neevan Ramalingam, Yoon Sim Yap, Jay West, Ali Asgar Bhagat, Balaram Vishnu Subramani, Burhanuddin Sabuwala, Tuan Zea Tan, Jean Paul Thiery, Mohit Kumar Jolly, Naveen Ramalingam*, Debarka Sengupta*

download (2).jpg
Improved dropClust R package with integrative analysis support for scRNA-seq data

Debajyoti Sinha, Pradyumn Sinha, Ritwik Saha, Sanghamitra Bandyopadhyay*, Debarka Sengupta*

CI6PLyyW8AAWMpO.png
Staging System to Predict the Risk of Relapse in Multiple Myeloma Patients Undergoing Autologous Stem Cell Transplantation

Chitrita Goswami, Sarita Poonia, Lalit Kumar*, Debarka Sengupta*

download (1).jpg
Discovery of rare cells from voluminous single cell expression data

Aashi Jindal, Prashant Gupta, Jayadeva*, Debarka Sengupta*

m_cover (1).gif
CellAtlasSearch: a scalable search engine for single cells

Divyanshu Srivastava, Arvind Iyer, Vibhor Kumar*, Debarka Sengupta*

m_cover.gif
dropClust: efficient clustering of ultra-large scRNA-seq data

Debajyoti Sinha, Akhilesh Kumar, Himanshu Kumar, Sanghamitra Bandyopadhyay*, Debarka Sengupta*